PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G078500.2
Common NameB456_001G078500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 367aa    MW: 39711.8 Da    PI: 8.8712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G078500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.21.1e-16163210355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++hn  Er+RRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Gorai.001G078500.2 163 ATHNLSERKRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 210
                         69*************************9.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-19158221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.076160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-14163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-17164214No hitNo description
Gene3DG3DSA:4.10.280.102.7E-19164218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MHGFSGFLPT APTKPTCRSN DTLESIVHQA TYHNQDETPA NTSSIAASSG GNRSESSSRL  60
PPVSVAARLT KKRAQPTSDS DQCRKHNISC GIQKDKADRS ECGCDTFYKI DNDATMVTWG  120
SHDESLQSLK TKTTDGDSGC HDGSESRDET GRSHPTRRSR AAATHNLSER KRRDRINQKM  180
KALQKLVPNA SKTDKASMLD EVIEYLKQLQ AQVQVMSMRS IPPMMMMPLG LQHHQHLQMS  240
LLGRIMAGMG VNHALGMGMG LVDINAATPP NASQSLPPLL HLPPPFLATA LPPMIPSRAT  300
ATAAAQSNPN ASSSDSIPLP DPSCAFLTQS MNMELYSKMA ALYQAQMNRT TETASSPSRS  360
NNIKQD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5804147e-66JX580414.1 Gossypium hirsutum clone NBRI_GE12836 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470587.10.0PREDICTED: transcription factor UNE10-like
TrEMBLA0A0D2LW150.0A0A0D2LW15_G
STRINGVIT_17s0000g06930.t017e-87(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-30bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]